PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 262aa    MW: 29442.7 Da    PI: 6.9274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66915.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-1397148155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  EPS66915.1  97 QRMTHIAVERNRRKQMNEHLRVLRSLMPNS---YVQRGDQASIIGGAIEFVRELE 148
                 79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-1495151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-1395152No hitNo description
SuperFamilySSF474591.31E-1696162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51696147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1097148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEKQGINYMV GNCNYGEGGQ ELMMVDYMLQ SPTPDPPLLS FADAMAQPSQ DHQRTGMGMG  60
MGVDTSAYFL KFPVDGAGKN KRKRVRTVKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR  120
SLMPNSYVQR GDQASIIGGA IEFVRELEQL LQCLESQKRR RLIPAEAEER AESKSCLADV  180
EVKVAGYEGL IKILSRRREG QLIKTIAALE QDLQLCIVHT NITTIDQTVL YSFNVKVVGG  240
EEQSAQDLAN SIQQIFSFIN AN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197108RMTHIAVERNRR
2157161KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532793.13e-97PREDICTED: transcription factor FAMA
SwissprotQ56YJ88e-91FAMA_ARATH; Transcription factor FAMA
TrEMBLS8CJR80.0S8CJR8_9LAMI; Uncharacterized protein
STRINGPOPTR_0001s32160.11e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.13e-74bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]